AdiFind is research software for adipocyte measurement and tumor-adjacent adipose analysis on whole-slide histology images. Pre-release example results are available below and can be reviewed in QuPath. More information about AdiFind will be released soon. For questions or collaboration, please contact Martin Eide Lien at martin [dot] lien [at] uib [dot] no.Annotated whole-slide output
AdiFind produces annotated whole-slide TIFF overlays with optional adipocyte IDs, tissue-detection and tissue-mask previews, QuPath-ready GeoJSON annotations, adipocyte-level CSV measurements, and summary statistics for downstream review and integration.
Processing flow
Whole-slide image pyramid
AdiFind moves between whole-slide context and full-resolution adipocyte analysis using a multi-resolution image pyramid.
Downscaled 1X overview
AdiFind uses a downscaled 1X overview for tumour detection and tissue guidance before high-resolution analysis.
Full-resolution preprocessing
AdiFind preprocesses full-resolution tissue windows to enhance adipocyte boundaries before detection.
Sliding-window inference
AdiFind performs sliding-window inference across guided tissue regions and reconcile overlapping detections.
Features
Desktop interface for configuring and running analysis.
User friendly interface
Configure analysis settings, and run the AdiFind processing workflow from a user friendly interface.
Region of interest support
Limit analysis to the tissue region you want to measure.
Draw an ROI for analysis
Define a freehand or polygonal region of interest to restrict analysis to a selected tissue area.
Annotated AdiFind output for the selected ROI.
Inspect ROI results
Review the adipocyte annotations generated within the selected region of interest.
Using AdiFind results in QuPath
AdiFind + QuPath = 🤝
Import results to QuPath
Inspect exported AdiFind annotations across the processed tissue region in QuPath.
Keep adipocyte sizing inside your QuPath workflow.
Inspect adipocyte measurements directly in QuPath
Zoom in on individual adipocytes and review their stored size measurements directly alongside your other QuPath annotations.
AdiFind masks and StarDist nuclei segmentation in QuPath.
AdiFind integrates easily with existing QuPath based analyses & workflows
Light green masks show AdiFind adipocyte results, while red dots show StarDist nuclei segmentation, demonstrating how AdiFind outputs can be used directly alongside existing QuPath workflows.